drm/amdgpu: fix clear_all and replace handling in the VM (v2)

v2: assign bo_va as well

We need to put the lose ends on the invalid list because it is possible
that we need to split up huge pages for them.

Cc: stable@vger.kernel.org
Signed-off-by: Christian König <christian.koenig@amd.com>
Signed-off-by: Junwei Zhang <Jerry.Zhang@amd.com> (v2)
Reviewed-by: David Zhou <david1.zhou@amd.com>
Signed-off-by: Alex Deucher <alexander.deucher@amd.com>