nspawn: create boot_id and kmsg files for overmounting in /run, not /tmp

/tmp might not be mounted at all yet (given that we support
SYSTEMD_NSPAWN_TMPFS_TMP=0 to turn this off), and /tmp is a dir systemd
usually tries to unmount during shutdown (unlike /run), and we shouldn't
keep it busy. Hence let's just move these deleted files to /run so that
we don't keep /tmp needlessly busy.