mm/THP: use pmd_populate() to update the pmd with pgtable_t pointer

We should not use set_pmd_at to update pmd_t with pgtable_t pointer.
set_pmd_at is used to set pmd with huge pte entries and architectures
like ppc64, clear few flags from the pte when saving a new entry.
Without this change we observe bad pte errors like below on ppc64 with
THP enabled.

  BUG: Bad page map in process ld mm=0xc000001ee39f4780 pte:7fc3f37848000001 pmd:c000001ec0000000

Signed-off-by: Aneesh Kumar K.V <aneesh.kumar@linux.vnet.ibm.com>
Cc: Hugh Dickins <hughd@google.com>
Cc: Benjamin Herrenschmidt <benh@kernel.crashing.org>
Reviewed-by: Andrea Arcangeli <aarcange@redhat.com>
Cc: <stable@vger.kernel.org>
Signed-off-by: Andrew Morton <akpm@linux-foundation.org>
Signed-off-by: Linus Torvalds <torvalds@linux-foundation.org>