GITC: Always update the gitc manifest from the repo manifest
This way any changes made to the main manifest are reflected in the gitc manifest. It's also necessary to use both manifests to sync since the information required to update the gitc manifest is actually in the repo manifest. This also fixes a few issues that came up when testing. notdefault groups weren't being saved to the gitc manifest in a method that matched 'sync'. The merge branch wasn't always being set to the correct value either. Change-Id: I435235cb5622a048ffad0059affd32ecf71f1f5b
parent
5cc38403
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